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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMARCA4
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX170356
GSM971343: Bcell Brg1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMARCA4
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
source_name
Blood
tissue
Blood
developmental stage
Adult
genotype/variation
wild type
cell type
Bcell
chip antibody details
Anti-Brg1 (Khavari, P. A., et al., 1993, Nature, 366:170-174)
Sequenced DNA Library
library_name
GSM971343: Bcell_Brg1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
15568445
Reads aligned (%)
82.0
Duplicates removed (%)
17.5
Number of peaks
4946 (qval < 1E-05)
hg19
Number of total reads
15568445
Reads aligned (%)
81.3
Duplicates removed (%)
18.2
Number of peaks
4861 (qval < 1E-05)
Base call quality data from
DBCLS SRA